These easy jalapeño cheddar protein bagels are soft and chewy on the inside, golden on the outside, and packed with savory flavor. Made without yeast or complicated steps, they come together quickly using simple ingredients and deliver a satisfying boost of protein in every bite. The combination of melty cheddar and fresh jalapeño creates a bold, bakery-style bagel that works perfectly for breakfast, snacks, or light meals.

Why You’ll Love This Recipe

These bagels are high in protein thanks to Greek yogurt and egg, making them more filling than traditional bagels. They require no yeast, no boiling, and no rising, which keeps the process simple and approachable. You can make them in either the air fryer or the oven, depending on what you prefer. The dough comes together in one bowl with minimal mess, and the bagels store and reheat beautifully, making them ideal for meal prep. The savory cheddar and jalapeño flavor also makes them versatile for many toppings and fillings.

Ingredients

(Tip: You’ll find the full list of ingredients and measurements in the recipe card below.)

1 cup all-purpose flour
1 1/2 teaspoons baking powder
1/4 teaspoon salt
1 cup plain nonfat Greek yogurt
1 large egg
1 tablespoon water
1/3 cup shredded cheddar cheese
1 fresh jalapeño pepper, thinly sliced

Directions

Add the all-purpose flour, baking powder, and salt to a mixing bowl and stir until well combined. Add the Greek yogurt and mix until a shaggy dough begins to form.

Transfer the dough to a lightly floured surface and knead for 1 to 2 minutes, until smooth and no longer sticky. Sprinkle with a small amount of additional flour if needed.

Divide the dough into 4 equal portions. Roll each portion into a rope and shape it into a circle, pressing the ends together to form a bagel shape.

In a small bowl, whisk together the egg and water. Brush a light layer of the egg wash over each bagel. Sprinkle the shredded cheddar cheese on top and finish with jalapeño slices.

Line an air fryer basket or baking tray with parchment paper and place the bagels on top, leaving space between them.

For the air fryer, cook at 350°F for 20 minutes, flipping halfway through.
For the oven, bake at 350°F for about 30 minutes, or until the bagels are golden brown and cooked through.

Allow the bagels to cool slightly before serving.

Servings and timing

This recipe makes 4 bagels.

Preparation time is approximately 10 minutes.
Air fryer cooking time is 20 minutes.
Oven baking time is about 30 minutes.

Total time ranges from 30 to 40 minutes depending on the cooking method used.

Variations

For a milder version, remove the seeds from the jalapeño before slicing. If you prefer more heat, leave the seeds in or add an extra jalapeño. Sharp cheddar gives the strongest flavor, but mild cheddar or a blend of cheeses can be used. For extra texture, sprinkle a little additional cheese on top before baking to create a crispy cheese crust. You can also shape the dough into mini bagels for smaller portions or snacks.

Storage/Reheating

Store cooled bagels in an airtight container in the refrigerator for up to 5 days. For longer storage, freeze them individually and thaw as needed. Reheat by toasting for the best texture, or warm briefly in the oven or air fryer until heated through.

FAQs

Can I make these bagels without an air fryer?

Yes, these bagels bake very well in a conventional oven at 350°F for about 30 minutes.

What kind of Greek yogurt works best?

Plain nonfat Greek yogurt provides the best texture and highest protein content for this recipe.

Are these bagels spicy?

They have a mild to moderate heat. Removing the jalapeño seeds will significantly reduce the spice level.

Can I use whole wheat flour instead of all-purpose flour?

Whole wheat flour can be used, but the bagels may be slightly denser. A half-and-half blend works well.

How do I know when the bagels are fully cooked?

They should be golden brown on the outside and firm to the touch, with no wet dough in the center.

Can I freeze these bagels?

Yes, they freeze very well. Let them cool completely, then store in a freezer-safe container.

Do I need to grease the parchment paper?

No, parchment paper prevents sticking and does not require additional grease.

Can I add extra protein to the dough?

You can mix in a small amount of unflavored protein powder, but too much may affect texture.

What are the best toppings for these bagels?

They are great with cream cheese, whipped cottage cheese, avocado, or used for egg-based breakfast sandwiches.

Can I double the recipe?

Yes, the recipe doubles easily. Just be sure to cook in batches so the bagels do not touch while baking or air frying.

Conclusion

These jalapeño cheddar protein bagels are an easy, flavorful way to enjoy a high-protein baked good without complicated steps. With their chewy texture, cheesy topping, and customizable spice level, they fit effortlessly into busy mornings or meal prep routines. Whether toasted or enjoyed fresh, they are a satisfying homemade option you’ll want to make again and again.

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