These stuffed everything bagel bites are warm, cheesy, and bursting with the classic flavors you love—made in a low-carb, keto-friendly way. With a soft, chewy exterior and a creamy center, they’re perfect for breakfast, snacks, or quick meal prep.
Why You’ll Love This Recipe
These bagel bites deliver everything you crave without the heaviness of traditional dough. The combination of mozzarella and cream cheese creates a soft, bread-like texture while keeping things low in carbs. They’re quick to prepare, require simple ingredients, and bake in under 15 minutes.
Another reason to love this recipe is its versatility. You can enjoy them fresh out of the oven, pack them for on-the-go snacks, or customize the filling to suit your taste. The everything bagel seasoning adds a savory, slightly crunchy topping that makes each bite irresistible.
Ingredients
(Tip: You’ll find the full list of ingredients and measurements in the recipe card below.)
1½ cups shredded mozzarella cheese
¾ cup almond flour
10 oz cream cheese, divided
1 teaspoon baking powder
2 eggs
2–3 tablespoons everything but the bagel seasoning
Directions
Start by preheating your oven to 400°F (205°C) and lining a baking sheet with parchment paper.
In a microwave-safe bowl, combine the shredded mozzarella cheese with 8 oz of the cream cheese. Heat for about 90 seconds, stirring halfway through, until the mixture is fully melted and smooth.
Add the almond flour, baking powder, and one egg to the melted cheese mixture. Stir well until a soft dough forms. You may need to knead it slightly to fully combine all the ingredients.
Place the dough onto parchment paper and gently roll it out into an even layer. Divide the dough into 8 equal portions.
Cut the remaining 2 oz of cream cheese into 8 small cubes. Take each portion of dough, place a cube of cream cheese in the center, and carefully wrap the dough around it. Seal the edges completely and roll into a ball shape.
Roll each dough ball in everything bagel seasoning, making sure it is well coated. Arrange them evenly on the prepared baking sheet.
Beat the remaining egg and brush it over the tops of each ball to help them brown nicely in the oven.
Bake for about 14 minutes or until the bagel bites are golden brown and slightly firm to the touch. Allow them to cool for a few minutes before serving.
Servings and timing
This recipe makes 8 bagel bites, which is ideal for 2 to 4 servings depending on portion size.
Preparation time takes about 10 minutes, while baking takes approximately 14 minutes. In total, you can have these ready in under 25 minutes, making them perfect for busy mornings or quick snacks.
Variations
You can easily customize these bagel bites to keep things interesting. Add shredded cheddar or a mix of cheeses for a richer flavor. For a savory twist, mix in finely chopped herbs like parsley or chives into the dough.
If you prefer a bit of spice, sprinkle chili flakes into the dough or add a pinch of garlic powder for extra depth. You can also replace the everything bagel seasoning with sesame seeds or black seeds for a simpler topping.
For a more filling option, try adding small pieces of cooked chicken or turkey inside along with the cream cheese.
Storage/Reheating
Store any leftover bagel bites in an airtight container in the refrigerator for up to 4 days.
To reheat, place them in the oven at 350°F (175°C) for about 5–7 minutes until warmed through. You can also use a microwave for about 20–30 seconds, but the oven method keeps the texture better.
For longer storage, freeze the baked bagel bites in a sealed container for up to 2 months. Reheat directly from frozen in the oven until hot.
FAQs
Can I make these ahead of time?
Yes, you can prepare the dough and shape the bites in advance, then store them in the refrigerator and bake when ready.
Are these truly keto-friendly?
Yes, they are made with almond flour and cheese, which keeps the carbohydrate content low.
Can I use a different flour?
Almond flour works best for this recipe. Substituting other flours may change the texture significantly.
What does the texture feel like?
They have a soft, chewy texture similar to traditional bagels, with a creamy center.
Can I skip the seasoning?
Yes, but the everything bagel seasoning adds a lot of flavor. You can replace it with sesame or other seeds.
Why is my dough sticky?
The dough can be slightly sticky due to the melted cheese. Lightly oil your hands to make handling easier.
Can I add fillings other than cream cheese?
Yes, you can experiment with cheese blends or small savory fillings like cooked chicken.
How do I prevent them from opening while baking?
Make sure to seal the dough tightly around the filling and roll it into a smooth ball.
Can I make them dairy-free?
This recipe relies heavily on cheese, so dairy-free substitutions may not yield the same results.
Do they need to be refrigerated after baking?
Yes, since they contain cream cheese, they should be stored in the refrigerator if not eaten immediately.
Conclusion
Stuffed everything bagel bites are a simple yet satisfying recipe that combines convenience with bold flavor. With their cheesy dough, creamy filling, and savory topping, they make a perfect addition to your breakfast rotation or snack list. Easy to prepare and endlessly customizable, they’re sure to become a favorite in your kitchen.
